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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'sub_header', 'description', 'cpt_code', 'code_type'}) and 4 missing columns ({'SHORT_DESCRIPTION', 'CODE', 'LONG_DESCRIPTION', 'NF EXCL'}).
This happened while the csv dataset builder was generating data using
hf://datasets/mozay22/medical_code_mapping/cpt_codes_consolidated.csv (at revision c38ed532ab9b9914f2f8d6e0726b23132e94cdec)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2011, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 585, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2302, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2256, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
cpt_code: string
sub_header: string
description: string
code_type: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 739
to
{'CODE': Value(dtype='string', id=None), 'SHORT_DESCRIPTION': Value(dtype='string', id=None), 'LONG_DESCRIPTION': Value(dtype='string', id=None), 'NF EXCL': Value(dtype='string', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1321, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 935, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1027, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1122, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1882, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2013, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 4 new columns ({'sub_header', 'description', 'cpt_code', 'code_type'}) and 4 missing columns ({'SHORT_DESCRIPTION', 'CODE', 'LONG_DESCRIPTION', 'NF EXCL'}).
This happened while the csv dataset builder was generating data using
hf://datasets/mozay22/medical_code_mapping/cpt_codes_consolidated.csv (at revision c38ed532ab9b9914f2f8d6e0726b23132e94cdec)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
CODE
string | SHORT_DESCRIPTION
string | LONG_DESCRIPTION
string | NF EXCL
null |
|---|---|---|---|
A000
|
Cholera due to Vibrio cholerae 01, biovar cholerae
|
Cholera due to Vibrio cholerae 01, biovar cholerae
| null |
A001
|
Cholera due to Vibrio cholerae 01, biovar eltor
|
Cholera due to Vibrio cholerae 01, biovar eltor
| null |
A009
|
Cholera, unspecified
|
Cholera, unspecified
| null |
A0100
|
Typhoid fever, unspecified
|
Typhoid fever, unspecified
| null |
A0101
|
Typhoid meningitis
|
Typhoid meningitis
| null |
A0102
|
Typhoid fever with heart involvement
|
Typhoid fever with heart involvement
| null |
A0103
|
Typhoid pneumonia
|
Typhoid pneumonia
| null |
A0104
|
Typhoid arthritis
|
Typhoid arthritis
| null |
A0105
|
Typhoid osteomyelitis
|
Typhoid osteomyelitis
| null |
A0109
|
Typhoid fever with other complications
|
Typhoid fever with other complications
| null |
A011
|
Paratyphoid fever A
|
Paratyphoid fever A
| null |
A012
|
Paratyphoid fever B
|
Paratyphoid fever B
| null |
A013
|
Paratyphoid fever C
|
Paratyphoid fever C
| null |
A014
|
Paratyphoid fever, unspecified
|
Paratyphoid fever, unspecified
| null |
A020
|
Salmonella enteritis
|
Salmonella enteritis
| null |
A021
|
Salmonella sepsis
|
Salmonella sepsis
| null |
A0220
|
Localized salmonella infection, unspecified
|
Localized salmonella infection, unspecified
| null |
A0221
|
Salmonella meningitis
|
Salmonella meningitis
| null |
A0222
|
Salmonella pneumonia
|
Salmonella pneumonia
| null |
A0223
|
Salmonella arthritis
|
Salmonella arthritis
| null |
A0224
|
Salmonella osteomyelitis
|
Salmonella osteomyelitis
| null |
A0225
|
Salmonella pyelonephritis
|
Salmonella pyelonephritis
| null |
A0229
|
Salmonella with other localized infection
|
Salmonella with other localized infection
| null |
A028
|
Other specified salmonella infections
|
Other specified salmonella infections
| null |
A029
|
Salmonella infection, unspecified
|
Salmonella infection, unspecified
| null |
A030
|
Shigellosis due to Shigella dysenteriae
|
Shigellosis due to Shigella dysenteriae
| null |
A031
|
Shigellosis due to Shigella flexneri
|
Shigellosis due to Shigella flexneri
| null |
A032
|
Shigellosis due to Shigella boydii
|
Shigellosis due to Shigella boydii
| null |
A033
|
Shigellosis due to Shigella sonnei
|
Shigellosis due to Shigella sonnei
| null |
A038
|
Other shigellosis
|
Other shigellosis
| null |
A039
|
Shigellosis, unspecified
|
Shigellosis, unspecified
| null |
A040
|
Enteropathogenic Escherichia coli infection
|
Enteropathogenic Escherichia coli infection
| null |
A041
|
Enterotoxigenic Escherichia coli infection
|
Enterotoxigenic Escherichia coli infection
| null |
A042
|
Enteroinvasive Escherichia coli infection
|
Enteroinvasive Escherichia coli infection
| null |
A043
|
Enterohemorrhagic Escherichia coli infection
|
Enterohemorrhagic Escherichia coli infection
| null |
A044
|
Other intestinal Escherichia coli infections
|
Other intestinal Escherichia coli infections
| null |
A045
|
Campylobacter enteritis
|
Campylobacter enteritis
| null |
A046
|
Enteritis due to Yersinia enterocolitica
|
Enteritis due to Yersinia enterocolitica
| null |
A047
|
Enterocolitis due to Clostridium difficile
|
Enterocolitis due to Clostridium difficile
| null |
A0471
|
Enterocolitis due to Clostridium difficile, recurrent
|
Enterocolitis due to Clostridium difficile, recurrent
| null |
A0472
|
Enterocolitis d/t Clostridium difficile, not spcf as recur
|
Enterocolitis due to Clostridium difficile, not specified as recurrent
| null |
A048
|
Other specified bacterial intestinal infections
|
Other specified bacterial intestinal infections
| null |
A049
|
Bacterial intestinal infection, unspecified
|
Bacterial intestinal infection, unspecified
| null |
A050
|
Foodborne staphylococcal intoxication
|
Foodborne staphylococcal intoxication
| null |
A051
|
Botulism food poisoning
|
Botulism food poisoning
| null |
A052
|
Foodborne Clostridium perfringens intoxication
|
Foodborne Clostridium perfringens [Clostridium welchii] intoxication
| null |
A053
|
Foodborne Vibrio parahaemolyticus intoxication
|
Foodborne Vibrio parahaemolyticus intoxication
| null |
A054
|
Foodborne Bacillus cereus intoxication
|
Foodborne Bacillus cereus intoxication
| null |
A055
|
Foodborne Vibrio vulnificus intoxication
|
Foodborne Vibrio vulnificus intoxication
| null |
A058
|
Other specified bacterial foodborne intoxications
|
Other specified bacterial foodborne intoxications
| null |
A059
|
Bacterial foodborne intoxication, unspecified
|
Bacterial foodborne intoxication, unspecified
| null |
A060
|
Acute amebic dysentery
|
Acute amebic dysentery
| null |
A061
|
Chronic intestinal amebiasis
|
Chronic intestinal amebiasis
| null |
A062
|
Amebic nondysenteric colitis
|
Amebic nondysenteric colitis
| null |
A063
|
Ameboma of intestine
|
Ameboma of intestine
| null |
A064
|
Amebic liver abscess
|
Amebic liver abscess
| null |
A065
|
Amebic lung abscess
|
Amebic lung abscess
| null |
A066
|
Amebic brain abscess
|
Amebic brain abscess
| null |
A067
|
Cutaneous amebiasis
|
Cutaneous amebiasis
| null |
A0681
|
Amebic cystitis
|
Amebic cystitis
| null |
A0682
|
Other amebic genitourinary infections
|
Other amebic genitourinary infections
| null |
A0689
|
Other amebic infections
|
Other amebic infections
| null |
A069
|
Amebiasis, unspecified
|
Amebiasis, unspecified
| null |
A070
|
Balantidiasis
|
Balantidiasis
| null |
A071
|
Giardiasis [lambliasis]
|
Giardiasis [lambliasis]
| null |
A072
|
Cryptosporidiosis
|
Cryptosporidiosis
| null |
A073
|
Isosporiasis
|
Isosporiasis
| null |
A074
|
Cyclosporiasis
|
Cyclosporiasis
| null |
A078
|
Other specified protozoal intestinal diseases
|
Other specified protozoal intestinal diseases
| null |
A079
|
Protozoal intestinal disease, unspecified
|
Protozoal intestinal disease, unspecified
| null |
A080
|
Rotaviral enteritis
|
Rotaviral enteritis
| null |
A0811
|
Acute gastroenteropathy due to Norwalk agent
|
Acute gastroenteropathy due to Norwalk agent
| null |
A0819
|
Acute gastroenteropathy due to other small round viruses
|
Acute gastroenteropathy due to other small round viruses
| null |
A082
|
Adenoviral enteritis
|
Adenoviral enteritis
| null |
A0831
|
Calicivirus enteritis
|
Calicivirus enteritis
| null |
A0832
|
Astrovirus enteritis
|
Astrovirus enteritis
| null |
A0839
|
Other viral enteritis
|
Other viral enteritis
| null |
A084
|
Viral intestinal infection, unspecified
|
Viral intestinal infection, unspecified
| null |
A088
|
Other specified intestinal infections
|
Other specified intestinal infections
| null |
A09
|
Infectious gastroenteritis and colitis, unspecified
|
Infectious gastroenteritis and colitis, unspecified
| null |
A150
|
Tuberculosis of lung
|
Tuberculosis of lung
| null |
A154
|
Tuberculosis of intrathoracic lymph nodes
|
Tuberculosis of intrathoracic lymph nodes
| null |
A155
|
Tuberculosis of larynx, trachea and bronchus
|
Tuberculosis of larynx, trachea and bronchus
| null |
A156
|
Tuberculous pleurisy
|
Tuberculous pleurisy
| null |
A157
|
Primary respiratory tuberculosis
|
Primary respiratory tuberculosis
| null |
A158
|
Other respiratory tuberculosis
|
Other respiratory tuberculosis
| null |
A159
|
Respiratory tuberculosis unspecified
|
Respiratory tuberculosis unspecified
| null |
A170
|
Tuberculous meningitis
|
Tuberculous meningitis
| null |
A171
|
Meningeal tuberculoma
|
Meningeal tuberculoma
| null |
A1781
|
Tuberculoma of brain and spinal cord
|
Tuberculoma of brain and spinal cord
| null |
A1782
|
Tuberculous meningoencephalitis
|
Tuberculous meningoencephalitis
| null |
A1783
|
Tuberculous neuritis
|
Tuberculous neuritis
| null |
A1789
|
Other tuberculosis of nervous system
|
Other tuberculosis of nervous system
| null |
A179
|
Tuberculosis of nervous system, unspecified
|
Tuberculosis of nervous system, unspecified
| null |
A1801
|
Tuberculosis of spine
|
Tuberculosis of spine
| null |
A1802
|
Tuberculous arthritis of other joints
|
Tuberculous arthritis of other joints
| null |
A1803
|
Tuberculosis of other bones
|
Tuberculosis of other bones
| null |
A1809
|
Other musculoskeletal tuberculosis
|
Other musculoskeletal tuberculosis
| null |
A1810
|
Tuberculosis of genitourinary system, unspecified
|
Tuberculosis of genitourinary system, unspecified
| null |
A1811
|
Tuberculosis of kidney and ureter
|
Tuberculosis of kidney and ureter
| null |
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